...INTERMEDIATE MOLECULAR CELL BIOLOGY Biological Sciences 121 – Spring 2013 Section 1 - Course Number 33203 I. Course Information Prerequisites: BIO 01 and 02 Instructor: Dr. Tom Landerholm, Humboldt 211E, 278-6152, e-mail: landerholm@csus.edu Lectures: Monday and Wednesday 3:00-4:15 pm, Sequoia 301 Office Hours: Monday and Wednesday 1:00-2:30 pm, Sequoia 326, or by appointment Required Textbook: Alberts, et al., Molecular Biology of the Cell. 5th edition. Garland Publishing, Hamden, CT. 2002. The text is available in the bookstore and two copies have been placed on reserve in the library. Downloadable Course Materials: 1. MySacCT 9.1: 2013 Spring: BIO 121 Molecular Cell Biology – SECTION 01 2. Syllabus and course schedule, outlines, PowerPoint slides, Note-taking sheets, study questions, previous exams as available. Grading: Grades will be based on the result of four midterm exams and a cumulative final exam: A(-) > 90%, B(+) > 80%, C(+) > 70%, D(+) > 60%, and F < 60%. Midterm Exam 1 Wednesday 02/13 100 points Midterm Exam 2 Wednesday 03/06 100 points Midterm Exam 3 Wednesday 04/03 100 points Midterm Exam 4 Wednesday 04/24 100 points Midterm Exam 5 Wednesday 05/15 100 points Final Exam Monday 05/20 150 points Total Points 650 II. Course Policies ...
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...29808279 RELIGION: CHRISTIAN MARITAL STATUS: SINGLE LANGUAGES: ENGLISH, KISWAHILI (both spoken and written) SUMMARY A hard-working and motivated BSC Biochemistry and Molecular Biology graduate with proven communication, organization and numeracy skills seeking to gain relevant experience to diversify and excel in varying fields. Looking to apply solid knowledge of biochemistry and molecular biology practices to setting and building on skills developed during course work studies. Eager to share the knowledge I have gained. Pro-active and keen to learn, ready to back up the knowledge I have gained with relevant experience .Wishing to make a positive contribution to production and research institutions. EDUCATION BACKGROUND 2012-2015: BSC BIOCHEMISTRY (MOLECULAR BIOLOGY) JOMO KENYATTA UNIVERSITY OF AGRICULTURE AND TECHNOLOGY, SECOND CLASS HONOURS (UPPER DIVISION) Jan 2007 –Nov 2010: KENYA CERTIFICATE OF SECONDARY EDUCATION St JOSEPH’S MUTITO BOYS SECONDARY SCHOOL GRADE ATTAINED: B (64 POINTS). 1997-2006: KENYA CERTIFICATE OF PRIMARY EDUCATION IKANGA PRIMARY SCHOOL ATTAINED 349 MARKS OUT OF 500 MARKS BIOCHEMISTRY AND MOLECULAR BIOLOGY EXPERIENCE Sept-Dec 2013: Attachment at Machakos Level-5 Hospital laboratory where I gained experience in department of biochemistry, microbiology and...
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...-01:00 Sec No. Room No. Teacher's Name Sem Asifa Kayani Dr. Nikhat Khan 7 7 7 01:30 -03:00 Sec No. Room No. Teacher's Name 1 Introductory Biochemistry Introduction to Biotechnology Molecular Biotechnology A A A 9 35 4 Sci Y Sci Y Sci Y 3 3 Microbiology Electricity and Magnetism A A 56 31 NB-15 NB-8 Data Analysis & Report Writing A Data Analysis & Report Writing B Data Analysis & Report Writing C 33 NB-14 Farah Arif Munaza Bajwa Itrat Batool Naqvi 21-Oct-13 1 5 41 Main Lab NB-7 1 1 English-I English-I N K 25 44 SCI Y SCI Z Sadia Ghaznavi Nasreen Pashsa 3 Mathematics A 28 NB-36 Nighat Altaf 5 Molecular Physiology A 16 SCI 9 SCI 6 SCI 8 SCI 12 SCI 12 Tooba Mohtsham Asifa Kayani Saleha Mehboob Ayesha Aftab Gaitee Joshua 22-Oct-13 Basic Concepts of Environmental Sciences 24 5 A Data Handling and Atomic Spectroscopy 5 A 5 5 Electrical Instrumentation Human and Animal Behavior A A 9 9 12 7 Advanced Topics in Molecular BiologyA 7 7 Medical Biotechnology Plant Ecology A A 19 33 3 SCI 6 SCI R SCI 6 SCI 7 SCI 7 SCI 8 SCI8 Dr.Hooria Younas Dr. Amber Shehzadi Asifa Kayani Ayesha Roohi Saleha Mehboob Saima Mubeen Dr. Saleema Bashir 3 3 Cell Biology Molecular Biology A A 22 37 SCI 12 NB 15 Amna Younus Dr. Amber Shehzadi 1 Introduction to Inorganic Chemistry A 1 Basic Concept of Organic ChemistryA 1 Calculus I A 21 35 27 NB-9 SCI 12 NB-9 Rahila Tariq...
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...NANOTECHNOLOGY Nanotechnology is the study of manipulating matter on an atomic and molecular scale. Nanotechnology is the science of very small things, usually smaller than one hundred nanometers which is smaller than a strand of the human hair even. It is an expected future manufacturing technology that will make most products lighter, faster, stronger, cleaner, and most of all less expensive but more precise. The world of nanotechnology is so broad, and touches on almost every topic of science. Nanotech is one of our biggest pushes into the future of our everyday living. There are hundreds of billions of research being conducted all around the world every day; in fact products seem to be changing as much as a daily routine nowadays. The research seems to be limitless on what we are able to do using nanotech, for instance when looking at the most common things we use such as: automobiles, computers, cell phones, televisions they seem to change instantly. Nanotechnology has the potential to change every part of our lives. Nanotechnology affects all materials: ceramics, metals, polymers, and biomaterials. New materials are the foundation of major technological advances. In the coming decade nanotechnology will have an enormous impact. Future advances could change our approaches to manufacturing, electronics, IT and communications technology making previous technology redundant and leading to applications which could not have been developed or even thought about, without...
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...ABSTRACT The effect of molecular weight on the rate of diffusion was assessed using two tests: the glass tube test and the agar-water gel test. In the glass tube set-up, two cotton plugs soaked in two different substances (HCl and NH4OH) were inserted into the two ends of the glass tube. The substance with the lighter molecular weight value (NH4OH, M = 35.0459 g/mole) diffused at a faster rate (dAve = 25.8cm), resulting in the formation of a white ring around the glass closer to the side of the heavier substance (HCl, M = 36.4611 g/mole; dAve = 10.8 cm). The agar-water gel set up was composed of a petri dish of agar-water gel containing three wells. Drops of potassium permanganate (KMnO4), potassium dichromate (K2Cr2O7) and methylene blue were simultaneously introduced to each well. Methylene blue, having the largest molecular weight, displayed the smallest diameter (18 mm) and diffused at the slowest rate (0.3668 mm/min.). Thus, the higher the molecular weight, the slower the rate of diffusion. INTRODUCTION A substance in the gaseous or liquid state consists of molecules or atoms that are independent, rapid, and random in motion. These molecules frequently collide with each other and with the sides of the container. In a period of time, this movement results in a uniform distribution of the molecules throughout the system. This process is called diffusion (Everett and Everett, n.d.). Diffusion occurs naturally, with the net movement of particles flowing from an area...
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...Abstract: Neuropathic pain is chronically increased pain and heat sensitivity resulting from damage to the central or peripheral nervous system. Neuropathic pain is constant, and difficult to treat, because the pain persists even after the injury has healed. Current drug treatments are ineffective, have short durations, and have unpleasant side effects. The SIP-30 gene is a candidate gene for involvement in neuropathic pain. When neuropathic pain is present, SIP-30 levels rise indicating some cause and effect relationship. Transposons are mobile genetic elements that move around within a genome and integrate randomly, in a mechanism similar to some viruses. The PiggyBac transposon, derived from the cabbage looper moth Trichoplusa ni, is a particularly useful transposon, with many features that make it an ideal vector for gene therapy research. Plasmid vectors will be constructed, one carrying the SIP-30 gene, and another carrying antisense SIP-30 in the PiggyBac vector, in order to deliver the genes into mouse nerve cells. This is hypothesized to increase and decrease the expression of neuropathic pain respectively. The gene will be delivered through intrathecal injections into the mouse intrathecal fluid of the spinal cord. If successful, this research can have serious implications for future human gene therapy to treat neurological disorders, using the PiggyBac vector as the gene delivery system. Introduction: Features of the PiggyBac Transposon: Transposons...
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...Agarose Gel Electrophoresis for the Separation of DNA Fragments Pei Yun Lee, John Costumbrado, Chih-Yuan Hsu, Yong Hoon Kim Department of Molecular, Cell, and Developmental Biology, University of California Los Angeles Video Article Chapters 0:05 Title 1:31 Preparation of the Gel 3:21 Setting up Gel Apparatus and Separating DNA Fragments 4:55 Observing Separated DNA Fragments 5:43 Results: Agarose Gel Electrophoresis of PCR Products 6:23 Conclusion Cite this Article Lee, P. Y., Costumbrado, J., Hsu, C. Y., Kim, Y. H. Agarose Gel Electrophoresis for the Separation of DNA Fragments. J. Vis. Exp. (62), e3923, doi:10.3791/3923 (2012). Abstract Agarose gel electrophoresis is the most effective way of separating DNA fragments of varying sizes ranging from 100 bp to 25 kb1. Agarose is isolated from the seaweed genera Gelidium and Gracilaria, and consists of repeated agarobiose (L- and D-galactose) subunits2. During gelation, agarose polymers associate non-covalently and form a network of bundles whose pore sizes determine a gel's molecular sieving properties. The use of agarose gel electrophoresis revolutionized the separation of DNA. Prior to the adoption of agarose gels, DNA was primarily separated using sucrose density gradient centrifugation, which only provided an approximation of size. To separate DNA using agarose gel electrophoresis, the DNA is loaded into pre-cast wells in the gel and a current applied. The phosphate backbone of the DNA (and RNA) molecule...
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...Agarose Gel Electrophoresis for the Isolation of Onion DNA. Abstract Agarose Gel Electrophoresis method was applied on an onion sample to isolate onion DNA. The objective of this experiment was to be able to extract the DNA of an onion in the presence of Ethylenediaminetetraacetic acid. The A260A280 absorbance ratios of isolated DNA were around 1.0593, suggesting that the DNA was not pure and could not be used for further analysis. Moreover, the A260A280 values were lower than 1.8, suggesting that there was a contamination by proteins. The DNA isolated by this protocol was not of sufficient quality. The integrity of the It was concluded that the DNA was not pure due to protein and aromatic contaminations. Introduction Nucleotides play an important role in the cell, either as energy carriers, as coenzymes or as building blocks for nucleic acids. Nucleotides consist of purine bases, adenine ad guanine and pyrimidine bases, cytosine, uracil, or thymine. (Wink, 2006). Deoxyribosenucleic acid is the cells master repository for genetic information. It is a negatively charged, macromolecule consisting of two strands of linked nucleotides, each of which are made up of a deoxyribose sugar residue, a phosphate group and one of bases; thymine, adenine, cytosine or guanine. (Voet and Voet, 2005). It is found coiled up around basic proteins called histones. (Bettelheim and Landesberg, 2009). DNA does not exist as a free molecule in a cell, but instead is associated with proteins and...
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...Cell Membrane Transport Harjot Dhesi Zoology 2011-13 Amon Gekombe 17 February 2014 Introduction The human body must maintain a balance within itself in order to abstain from disturbances caused by the external environment, for example a sudden increase in the outside temperature, or even the internal environment of the body, such as a dramatic drop in blood pressure. The body maintains this equilibrium through various methods and regulators, beginning in the cellular level. The human cell has a selectively permeable plasma membrane, allowing only certain substances to easily pass through to reach the inside or outside of the cell. Small, uncharged, and nonpolar molecules pass with the most ease through the plasma membrane (Tortora and Derrickson 2012). The constant moving in and out of substances is crucial in sustaining the life of the cell. Tortora and Derrickson explain in their book Principles of Anatomy and Physiology that, “Certain substances must move into the cell to support metabolic reactions. Other substances that have been produced by the cell for export or as cellular waste products must move out of the cell” (Tortora Derrickson 2012). Because of the selectively permeable nature of its plasma membrane, the cell can retain chemicals that have a difference in concentration on the inside than on outside of the cell. This is called the concentration gradient. A substance can either move against its concentration gradient by an active process, which requires...
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...Research Proposal The Harmful Influence of Quantum Dots on Cytoskeleton Meshwork Recent study suggests that Quantum Dot exposure causes significant morphological changes to macrophages; cells became round and condensed with fewer surface protrusions in response to QD treatment, it has also been demonstrated that QD’s intracellular localization undermined the capability of macrophagic phagocytosis. Since actin is fundamental to cellular morphological changes, it would be worthwhile to investigate the activity between QDs and the filamentous actin. In order for the QDs to affect the microfilament meshwork, QDs might be able to attach itself to actin. Through confocal laser scanning microscopy and immunoprecipitaion I hope to prove that QDs are able to attach with actin. Cell Culture I plan to culture three types of cells, 293, HepG2, Hela. A viability test will be done to establish a concentration for further experiment that does not exert harm on cell growth and survival of all three types of cells. I will also be looking Confocal Microscopy The nuclei will be stained with 4',6-diamidino-2-phenylindole (DAPI, blue) and the cytoskeleton with FITC-conjugated phalloidin (green). The fluorescence for nuclei, cytoskeleton and QDs will be assessed through confocal laser scanning microscopy. All three types of cells will be examined by confocal microscopy. Through this experiment, I will be observing the relative position of QDs in the cell, and the reduction in the...
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...Lecture 8 Nucleic Acid-Based Measurements Text Chapter 13 Wednesday, July 24, 2013 Total community DNA • Extract DNA from soil – – – – remove cells from soil separate cells from soil lyse cells separate DNA from cells – purify DNA • Extract DNA from soil – Extract DNA from cells in presence of soil • Bead-beating • chemical or enzymatic treatment – Sodium dodecyl sulfate or lysozyme Wednesday, July 24, 2013 DNA purification • Cesium chloride gradient centrifugation • Kits Low density DNA High density Wednesday, July 24, 2013 Visualizing nucleic acidsBlotting • Southern blotting – DNA • Northern blotting – RNA Wednesday, July 24, 2013 Agarose gel electrophoresis - Stain gel with ethidium bromide + Wednesday, July 24, 2013 DNA purification Agarose gel verification Wednesday, July 24, 2013 Gene Probes • Phylogenetic probes – 16S rRNA • Functional gene probes – dsr (bisulfite reductase) sulfate reduction – nirS (nitrate reductase) nitrate reduction Wednesday, July 24, 2013 16S rRNA gene probes • Oligonucleotide primers for PCR Target region cDNA 16S rDNA clone library • Oligonucleotide probes complementary to 16S rRNA molecule – no need for PCR because many copies in cells Wednesday, July 24, 2013 cDNA RNA ribosome Secondary Structure: 16S rRNA Different locations on the 16S rRNA molecule offer identity at different phylogenetic levels •Domain EU338 •Phylum •Class •Family •Group CF319a...
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...Biotechnology I find myself continually wondering how far man can go in forcing the world to conform to his needs and wants. Perhaps it’s time for man to do the conforming to nature. The study of Biotechnology has far reaching applications in changing man to better fit the world instead of the other way around. Currently biotechnology touches nearly every facet of man’s world, from genetics and the health industry to the production of chemicals and human cloning. I believe that biotechnology is only just beginning to discover ways to improve man’s relationship with his environment, and with my studies in biology, genetics, biochemistry, molecular and cellular biology, as a part of my career, I feel that the time is right to make a switch in occupations from dentistry to biotechnology. Since I began my studies, I have always had an interest in trying to find cures for incurable diseases and to find techniques to help those with chronic diseases better cope with the day to day challenges of their disease. I clearly see a path to realizing these dreams armed with a degree in biotechnology. The range of opportunities provided by a degree in biotechnology are mind expanding. Previously, I have not had the opportunity to follow my dreams until now, having moved to the United States from different dental practices in poorer countries. I wasn’t afforded the availability of the newest technological improvements. Our resources were meager, but my passion to help others with my knowledge...
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...Introduction: The purpose of this experiment was to successfully transform pGLO plasmid into E.Coli cells. In the first segment of this laboratory exercise, one had to carry out a restriction digest. Restriction digestion is the process of cutting DNA molecules into smaller pieces with special enzymes such as, BamH1 and EcoR1. One had to determine which of the two plasmids, A or B, were pGLO or pWEB. A plasmid is a small circular DNA strand in the cytoplasm of a bacterium (Isite, 2013). In order to determine that, one had to use BamH1 and EcoR1 on two tubes each one with plasmid A and the other with plasmid B to observe the cuts made by each enzyme. The hypothesis for this segment of the laboratory exercise states that pGLO was plasmid B, and pWEB was plasmid A. PGLO is a plasmid which contains green fluorescent protein (GFP). GFP is found in the Aquarius Victoria jelly fish. These jelly fish have a bioluminescent protein that emits blue light. GFP converts the blue light into green light, and that is why these jelly fish emit green light. The pGLO was inserted into E.coli by using transformation. Transformation is the process of transferring genetic material between microbial cells (Tu 2008). Bacterial cells need to be in a state of competency prior to transformation (Isite 2013). Some bacteria naturally achieve this stage when nutrients and oxygen are low (Isite 2013). In the laboratory, bacteria were artificially induced with calcium chloride to be competent for transformation...
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...LATEST BIOCHEMICAL TECHNIQUES CAPILLARY ELECTROPHORESIS Capillary electrophoresis is an analytical technique that separates ions based on their electrophoretic mobility with the use of an applied voltage. The electrophoretic mobility is dependent upon the charge of the molecule, the viscosity, and the atom’s radius. In conventional electrophoresis, electrically charged analytes move in a conductive liquid medium under the influence of an electric field. The rate at which the particles moves is directly proportional to the applied electric field; the greater the field strength, the faster the mobility. If two ions are the same size, the greater charge will move the fastest. For ions of the same charge, the smaller particle has less friction and overall faster migration rate. The technique of capillary electrophoresis was designed to separate species based on their size to charge ratio in the interior of a small capillary filled with an electrolyte. Capillary electrophoresis is used most predominately because it gives faster results and provides high resolution separation. It is a useful technique because there is a large range of detection methods available. PRINCIPLE Electrophoresis is the process whereby the movement of ions is produced under the influence of an applied voltage across a field that the ions exist. In electrophoresis, ions that are negatively charged will move or migrate towards the positively charged electrode while ions that are positively charged will...
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...Assignment 2: Gene Therapy Brandi Williams Professor Mintesinot Jiru Introduction to Biology SCI 115 August 31, 2014 Gene Therapy Technology What is gene therapy? According to the "Genetics Home Reference", gene therapy is an experimental technique that uses genes to treat or prevent disease. Gene therapy has many factors that allows them to work or sometimes not. Below I will explain gene therapy's importance and how it works. Gene therapy is a treatment that involves altering the genes inside your body's cells to stop disease. (MayoClinic Staff) Also, gene therapy replaces a faulty gene or adds a new gene in an attempt to cure disease or improve the the body's ability to fight disease. Disease can be caused by the genes not working properly, but there's a wide range of disease including, cancer, cysyic fibrosis, heart disease, diabetes, hemophilia and AIDS, that gene therapy holds promise for treating. Also, researchers are still standing how and when to use gene therapy. (MayoClinic Staff) Social and ethical implications of gene therapy is complex and still has underlying concerns that need to be evaluated before being out on the market. Only through clinical trials gene therapy had been tested and successful, but because scientists and doctors not knowing the effectiveness of gene therapy; there are still precautions. For this reason, even though it may have been successful and beneficial for others, some mau not be as fortunate and that will cause another set of problems...
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